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Pérez-Jiménez, M. J. (2010).  Razonando sobre soluciones mecánicas, inductivas y cualitativas. (D. Fernández, E.F. Gómez-Caminero, I. Hernández, Ed.).Estudios de Lógica, Lenguaje y Epistemología. 211-229.
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Romero-Campero F. J. (2013).  A polynomial alternative to unbounded environment for tissue P systems with cell division. International Journal of Computer Mathematics. 90(4), 760-775. Abstract
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2004).  Modelos de computación celular con membranas. Boletín de la Sociedad Española de Matemática Aplicada. 29, 57-88 .
Pérez-Jiménez, M. J. (2014).  A bioinspired computing approach to model complex systems. Invited talk. 15th Conference on Membrane Computing, pre-proceedings. 11-14.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Solving Knapsack Problems in a Sticker Based Model . Lecture Notes in Computer Science. 2340, 161-171. Abstract
Pérez-Jiménez, M. J. (2004).  Modelos de Computación Natural. (Ángel Nepomuceno, Francisco J. Salguero, Fernando Soler-Toscano, Ed.).Bases biológicas, lingüísticas, lógicas y computacionales para la conceptualización de la mente. 199-245.
Pérez-Jiménez, M. J. (2007).  Un marco formal para modelos de computación bio-inspirados. (Ángel Nepomuceno, Francisco J. Salguero, Fernando Soler-Toscano, Ed.).Lógica, Filosofía del Lenguaje y de la Lógica. 241-260.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2003).  Complexity Classes in Cellular Computing with Membranes. First Joint Meeting between the RSME and the AMS. 4. Abstract
Pérez-Jiménez, M. J., & Riscos-Núñez A. (2004).  Modelos de Computación Molecular, Celular y Cuántica . 262. Abstract
Pérez-Jiménez, M. J. (2005).  Computational complexity aspects of membrane computing: Ideas, results, open problems. (Miguel A. Gutiérrez-Naranjo, Gheorghe Paun, Mario J. Pérez-Jiménez, Ed.).Cellular Computing (Complexity Aspects). 277-292. Abstract
Pérez-Jiménez, M. J. (2009).  A computational complexity theory in membrane computing. (Gheorghe Paun, Mario J. Pérez-Jiménez, Agustín Riscos-Núñez, Ed.).10th Workshop on Membrane Computing. 82-105. Abstract
Pérez-Jiménez, M. J. (2009).  Métodos formales en Computación Bio-inspirada. (O. Pombo, Ángel Nepomuceno, Ed.).Lógica e Filosofía da Ciencia. 185-212.
Pérez-Jiménez, M. J., & Sosik P. (2012).  Improving the Efficiency of Tissue P Systems with Cell Separation. Tenth Brainstorming Week on Membrane Computing. II, 105-140. Abstract
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2005).  Generating pairwise disjoint families through DNA computations. (Mario J. Pérez-Jiménez, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Recent Results in Natural Computing. 231-246.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Computación Celular con Membranas: Un Modelo no Convencional . II+107.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Trading polarizations for bi-stable catalysts in P systems with active membranes. Lecture Notes in Computer Science. 3365, 373-388. Abstract
Pérez-Jiménez, M. J., & Riscos-Núñez A. (2004).  A linear-time solution for the knapsack problem with active membranes. Lecture Notes in Computer Science. 2933, 250-268. Abstract
Pérez-Hurtado, I., Pérez-Jiménez M. J., Riscos-Núñez A., Gutiérrez-Naranjo M. A., & Rius-Font M. (2011).  On a partial affirmative answer for a Paun's conjecture. International Journal of Foundations of Computer Science. 22(1), 55-64.
Pérez-Hurtado, I., Orellana-Martín D., Zhang G., & Pérez-Jiménez M. J. (2019).  P-Lingua in two steps: flexibility and efficiency. Journal of Membrane Computing. 1, 93–102.
Pérez-Hurtado, I., Orellana-Martín D., Riscos-Núñez A., & Pérez-Jiménez M. J. (2019).  A syntax for semantics in P-Lingua. Seventeenth Brainstorming Week on Membrane Computing. 139-150.
Pérez-Hurtado, I., Valencia-Cabrera L., Chacón J. M., Riscos-Núñez A., & Pérez-Jiménez M. J. (2014).  A P-Lingua based Simulator for Tissue P Systems with Cell Separation. Romanian Journal of Information Science and Technology. 17(1), 89-102.
Pérez-Hurtado, I., Pérez-Jiménez M. J., Zhang G., & Orellana-Martín D. (2018).  Robot path planning using rapidly-exploring random trees: A membrane computing approach. 7th International Conference on Computers Communications and Control (ICCCC2018).
Pérez-Hurtado, I., Orellana-Martín D., Martínez-del-Amor M. A., & Valencia-Cabrera L. (2021).  A membrane computing framework for social navigation in robotics. Computers and Electrical Engineering. 95, 107408.
Pérez-Hurtado, I., Valencia-Cabrera L., Pérez-Jiménez M. J., Colomer A. M., & Riscos-Núñez A. (2010).  MeCoSim: A general purpose software tool for simulating biological phenomena by means of P Systems. (K. Li, Z. Tang, R. Li, Atulya Nagar, R. Thamburaj, Ed.).IEEE Fifth International Conference on Bio-inpired Computing: Theories and Applications (BIC-TA 2010). I, 637-643. Abstract
Pérez-Hurtado, I., Orellana-Martín D., Martínez-del-Amor M. A., Valencia-Cabrera L., Riscos-Núñez A., & Pérez-Jiménez M. J. (2019).  11 years of P-Lingua: A backward glance. 20th International Conference on Membrane Computing, CMC20. 451-462.