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Pérez-Jiménez, M. J. (2004).  Computational Complexity in P Systems. (Giancarlo Mauri, Gheorghe Paun, Claudio Zandron, Ed.).Workshop on Membrane Computing, WMC5. 63.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2005).  Formal verification of programs in molecular models with random access memory. (Mario J. Pérez-Jiménez, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Recent results in Natural Computing. 205-229.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2003).  Solving VALIDITY Problem by Active Membranes with Input. (Matteo Cavaliere, Carlos Martín-Vide, Gheorghe Paun, Ed.).Brainstorming Week on Membrane Computing. 279-290.
Pérez-Jiménez, M. J., Riscos-Núñez A., Valencia-Cabrera L., & Orellana-Martín D. (2019).  Results on Computational Complexity in Bio-inspired Computing. Bio-Inspired Computing Models and Algorithms. 33-73. Abstract
Pérez-Jiménez, M. J., Sancho-Caparrini F., Graciani-Díaz C., & Romero-Jiménez Á. (2002).  Formalización computacional del experimento de Lipton sobre el problema SAT. Primer Congreso Español de Algoritmos Evolutivos y Bioinspirados. 326-332.
Pérez-Jiménez, M. J., & Sosík P. (2015).  An Optimal Frontier of the Efficiency of Tissue P Systems with Cell Separatio. Fundamenta Informaticae. 138(1-2), 45-60. Abstract
Pérez-Jiménez, M. J. (2006).  Tratamiento computacional de la incertidumbre mediante sistemas celulares con membranas. V Congreso de la Sociedad de Lógica, Metodología y Filosofía de la Ciencia en España. 607-609.
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2003).  Máquinas moleculares basadas en ADN. Colección de Divulgación Científica. 2, 255. Abstract
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Romero-Campero F. J. (2013).  A polynomial alternative to unbounded environment for tissue P systems with cell division. International Journal of Computer Mathematics. 90(4), 760-775. Abstract
Pérez-Jiménez, M. J., & Riscos-Núñez A. (2005).  Solving the Subset-Sum problem by P systems with active membranes. New Generation Computing. 23(4), 367-384. Abstract
Pérez-Jiménez, M. J. (2014).  A bioinspired computing approach to model complex systems. Invited talk. 15th Conference on Membrane Computing, pre-proceedings. 11-14.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Modelling vibrio fischeri's behaviour using P systems. ECAI 2004 (16th European Conference on Artificial Intelligence).
Pérez-Jiménez, M. J. (2004).  Recognizer membrane systems. ECAI 2004 (16th European Conference on Artificial Intelligence). 13.
Pérez-Jiménez, M. J. (2010).  Razonando sobre soluciones mecánicas, inductivas y cualitativas. (D. Fernández, E.F. Gómez-Caminero, I. Hernández, Ed.).Estudios de Lógica, Lenguaje y Epistemología. 211-229.
Pérez-Jiménez, M. J. (2006).  P systems-based modelling of cellular signalling pathways. (Hendrik J. Hoogeboom, Gheorghe Paun, Grzegorz Rozenberg, Ed.).Workshop on Membrane Computing, WMC7. 54-73.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2003).  Complexity Classes in Cellular Computing with Membranes. First Joint Meeting between the RSME and the AMS. 4. Abstract
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2004).  Solving the Bin Packing problem by recognizer P systems with active membranes. Second Brainstorming Week on Membrane Computing.
Pérez-Jiménez, M. J. (2004).  Modelos de Computación Natural. (Ángel Nepomuceno, Francisco J. Salguero, Fernando Soler-Toscano, Ed.).Bases biológicas, lingüísticas, lógicas y computacionales para la conceptualización de la mente. 199-245.
Pérez-Jiménez, M. J. (2009).  A computational complexity theory in membrane computing. (Gheorghe Paun, Mario J. Pérez-Jiménez, Agustín Riscos-Núñez, Ed.).10th Workshop on Membrane Computing. 82-105. Abstract
Pérez-Jiménez, M. J. (2009).  Métodos formales en Computación Bio-inspirada. (O. Pombo, Ángel Nepomuceno, Ed.).Lógica e Filosofía da Ciencia. 185-212.
Pérez-Jiménez, M. J., & Sosik P. (2012).  Improving the Efficiency of Tissue P Systems with Cell Separation. Tenth Brainstorming Week on Membrane Computing. II, 105-140. Abstract
Pérez-Jiménez, M. J. (2005).  Computational complexity aspects of membrane computing: Ideas, results, open problems. (Miguel A. Gutiérrez-Naranjo, Gheorghe Paun, Mario J. Pérez-Jiménez, Ed.).Cellular Computing (Complexity Aspects). 277-292. Abstract
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2005).  Generating pairwise disjoint families through DNA computations. (Mario J. Pérez-Jiménez, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Recent Results in Natural Computing. 231-246.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Attacking the Common Algorithmic Problem by recognizer P systems. Lecture Notes in Computer Science. 3354, 304-315. Abstract
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Verifying a P system generating squares. Romanian Journal of Information Science and Technology. 5(1-2), 181-191.