| Title | Simulation of P systems with active membranes on CUDA |
| Publication Type | Journal Papers |
| Year of Publication | 2010 |
| Authors | Cecilia, J. M., García J. M., Guerrero G. D., Martínez-del-Amor M. A., Pérez-Hurtado I., & Pérez-Jiménez M. J. |
| Journal Title | Briefings in Bioinformatics |
| Publisher | Oxford University Press |
| Volume | 11 |
| Pages | 313-322 |
| Date Published | 03/2010 |
| Abstract | P systems or Membrane Systems provide a high-level computational modelling framework that combines the structure and dynamic aspects of biological systems in a relevant and understandable way. They are inherently parallel and non-deterministic computing devices. In this article, we discuss the motivation, design principles and key of the implementation of a simulator for the class of recognizer P systems with active membranes running on a (GPU). We compare our parallel simulator for GPUs to the simulator developed for a single central processing unit (CPU), showing that GPUs are better suited than CPUs to simulate P systems due to their highly parallel nature. |
| Keywords | CUDA, GPU, Membrane computing, Natural computing, P systems, parallel computing |
| URL | http://bib.oxfordjournals.org/cgi/content/abstract/bbp064v1 |
| Notes | Parallel and Ubiquitous methods and tools in Systems Biology |
| Issue | 3 |
| Impact Factor | 9.283 |
| Ranking | 2/71 - Q1 |
| ISSN Number | 1477-4054 |
| DOI | 10.1093/bib/bbp064 |