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Pérez-Jiménez, M. J., & Riscos-Núñez A. (2005).  Solving the Subset-Sum problem by P systems with active membranes. New Generation Computing. 23(4), 367-384. Abstract
Pérez-Jiménez, M. J. (2014).  A bioinspired computing approach to model complex systems. Invited talk. 15th Conference on Membrane Computing, pre-proceedings. 11-14.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Modelling vibrio fischeri's behaviour using P systems. ECAI 2004 (16th European Conference on Artificial Intelligence).
Pérez-Jiménez, M. J. (2004).  Recognizer membrane systems. ECAI 2004 (16th European Conference on Artificial Intelligence). 13.
Pérez-Jiménez, M. J. (2010).  Razonando sobre soluciones mecánicas, inductivas y cualitativas. (D. Fernández, E.F. Gómez-Caminero, I. Hernández, Ed.).Estudios de Lógica, Lenguaje y Epistemología. 211-229.
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Romero-Campero F. J. (2013).  A polynomial alternative to unbounded environment for tissue P systems with cell division. International Journal of Computer Mathematics. 90(4), 760-775. Abstract
Pérez-Jiménez, M. J. (2006).  P systems-based modelling of cellular signalling pathways. (Hendrik J. Hoogeboom, Gheorghe Paun, Grzegorz Rozenberg, Ed.).Workshop on Membrane Computing, WMC7. 54-73.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2003).  Complexity Classes in Cellular Computing with Membranes. First Joint Meeting between the RSME and the AMS. 4. Abstract
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2004).  Solving the Bin Packing problem by recognizer P systems with active membranes. Second Brainstorming Week on Membrane Computing.
Pérez-Jiménez, M. J. (2004).  Modelos de Computación Natural. (Ángel Nepomuceno, Francisco J. Salguero, Fernando Soler-Toscano, Ed.).Bases biológicas, lingüísticas, lógicas y computacionales para la conceptualización de la mente. 199-245.
Pérez-Jiménez, M. J. (2009).  A computational complexity theory in membrane computing. (Gheorghe Paun, Mario J. Pérez-Jiménez, Agustín Riscos-Núñez, Ed.).10th Workshop on Membrane Computing. 82-105. Abstract
Pérez-Jiménez, M. J. (2009).  Métodos formales en Computación Bio-inspirada. (O. Pombo, Ángel Nepomuceno, Ed.).Lógica e Filosofía da Ciencia. 185-212.
Pérez-Jiménez, M. J., & Sosik P. (2012).  Improving the Efficiency of Tissue P Systems with Cell Separation. Tenth Brainstorming Week on Membrane Computing. II, 105-140. Abstract
Pérez-Jiménez, M. J. (2005).  Computational complexity aspects of membrane computing: Ideas, results, open problems. (Miguel A. Gutiérrez-Naranjo, Gheorghe Paun, Mario J. Pérez-Jiménez, Ed.).Cellular Computing (Complexity Aspects). 277-292. Abstract
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2005).  Generating pairwise disjoint families through DNA computations. (Mario J. Pérez-Jiménez, Álvaro Romero-Jiménez, Fernando Sancho-Caparrini, Ed.).Recent Results in Natural Computing. 231-246.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Attacking the Common Algorithmic Problem by recognizer P systems. Lecture Notes in Computer Science. 3354, 304-315. Abstract
Pérez-Jiménez, M. J., & Sancho-Caparrini F. (2002).  Verifying a P system generating squares. Romanian Journal of Information Science and Technology. 5(1-2), 181-191.
Pérez-Jiménez, M. J. (2019).   Computational complexity theory in Membrane Computing: Seventeen years after. 20th International Conference on Membrane Computing, CMC20. 191-206.
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2005).  Recent Results in Natural Computing. 311. Abstract
Pérez-Jiménez, M. J., Riscos-Núñez A., Rius-Font M., & Romero-Campero F. J. (2011).  Looking for small efficient P systems. Fundamenta Informaticae. 110(1-4), 295-308. Abstract
Pérez-Jiménez, M. J., Romero-Jiménez Á., & Sancho-Caparrini F. (2002).  Teoría de la Complejidad en Modelos de Computación Celular con Membranas. II+118 pages.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2005).  Modelling EGFR signalling network using continuous membrane systems. (G. Plotkin, Ed.).Third International Workshop on Computational Methods in Systems Biology, CMSB 2005 . 118-129.
Pérez-Jiménez, M. J., & Romero-Campero F. J. (2006).  P systems, a new computational modelling tool for Systems Biology. Lecture Notes in Computer Science. 4220, 176-197. Abstract
Pérez-Jiménez, M. J. (2010).  La mitosis celular: una sorprendente frontera de la eficiencia. (Fernando Soler-Toscano, H. von Ditmarsch, Francisco J. Salguero, Ed.).Liber amicorum Angel Nepomuceno. 99-108.
Pérez-Jiménez, M. J., Ortega A., & Sempere J. M. (2011).  The Spanish Network on Biomolecular and Biocellular Computing: Bio-inspired Natural Computing in Spain. ERCIM (European Research Consortium for Informatics). 85, 25. Abstract