<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="6.x">Drupal-Biblio</source-app><ref-type>13</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Luis Valencia-Cabrera</style></author><author><style face="normal" font="default" size="100%">Manuel García-Quismondo</style></author><author><style face="normal" font="default" size="100%">Mario J. Pérez-Jiménez</style></author><author><style face="normal" font="default" size="100%">Yansen Su</style></author><author><style face="normal" font="default" size="100%">Hui Yu</style></author><author><style face="normal" font="default" size="100%">Linqiang Pan</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Analysing Gene Networks with PDP Systems. Arabidopsis thaliana, a Case Study</style></title><secondary-title><style face="normal" font="default" size="100%">Eleventh Brainstorming Week on Membrane Computing (11BWMC)</style></secondary-title><tertiary-title><style face="normal" font="default" size="100%">Proceedings of the Eleventh Brainstorming Week on Membrane Computing (11BWMC)</style></tertiary-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">bioinformatics</style></keyword><keyword><style  face="normal" font="default" size="100%">Gene networks</style></keyword><keyword><style  face="normal" font="default" size="100%">Genetics</style></keyword><keyword><style  face="normal" font="default" size="100%">LAPP</style></keyword><keyword><style  face="normal" font="default" size="100%">Logic networks</style></keyword><keyword><style  face="normal" font="default" size="100%">MeCoSim</style></keyword><keyword><style  face="normal" font="default" size="100%">Membrane computing</style></keyword><keyword><style  face="normal" font="default" size="100%">Modelling</style></keyword><keyword><style  face="normal" font="default" size="100%">Software engineering</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2013</style></year><pub-dates><date><style  face="normal" font="default" size="100%">08/2013</style></date></pub-dates></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.gcn.us.es/files/11bwmc/257_valencia_cabrera.pdf</style></url></web-urls></urls><publisher><style face="normal" font="default" size="100%">Fénix Editora</style></publisher><pub-location><style face="normal" font="default" size="100%">Sevilla, España</style></pub-location><pages><style face="normal" font="default" size="100%">257-272</style></pages><isbn><style face="normal" font="default" size="100%">978-84-940691-9-2</style></isbn><abstract><style face="normal" font="default" size="100%">Gene Regulatory Networks (GRNs) are a useful tool for biologists to understand
the interactions among genes in living organisms. A special kind of GRNs known
as Logic Networks (LNs) has been recently introduced. These networks consider that
the state of one or more genes can in
uence another one. In a previous work, we proposed
a Membrane Computing model which simulates the dynamics of LNs by drawing
on the improved LAPP algorithm. In this paper we provide a case study for our LN
model on a network which regulates the circadian rhythms of long{term studied plant
Arabidopsis thaliana. We outline the software tools employed and propose a methodology
for analysing LNs on our Membrane Computing model. At the end of the paper, some
conclusions and future work are included.</style></abstract></record></records></xml>